-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1195

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1195-snap.1-T1
Couldn't classify 370, 533
Couldn't classify 2290, 2346
Sorry, prediction GeneMark_model.109020_t fails validation.
(AGC)	 AG	370-533	GT	CAG
(ACG)	 AG	1646-1666	GT	GTG
(AAT)	 AG	1693-1755	GT	GAG
(GAG)	 AG	1777-1831	GT	AGG
(AGG)	 AG	1871-1878	GT	GTG
(AGA)	 AG	1904-1993	GT	GGG
(GGA)	 AG	2017-2034	GT	TGG
(GAG)	 AG	2089-2202	GT	AAG
(AGG)	 AG	2227-2259	GT	GAG
(GAG)	 AG	2290-2346	GT	GGG
-recovered GeneMark_model.109020_t, internal, 370, 533
-recovered GeneMark_model.109020_t, internal, 1646, 1666
-recovered GeneMark_model.109020_t, internal, 1693, 1755
-recovered GeneMark_model.109020_t, internal, 1777, 1831
-recovered GeneMark_model.109020_t, internal, 1871, 1878
-recovered GeneMark_model.109020_t, internal, 1904, 1993
-recovered GeneMark_model.109020_t, internal, 2017, 2034
-recovered GeneMark_model.109020_t, internal, 2089, 2202
-recovered GeneMark_model.109020_t, internal, 2227, 2259
-recovered GeneMark_model.109020_t, internal, 2290, 2346
Couldn't classify 370, 483
Sorry, prediction Augustus_model.g41574.t1 fails validation.
(AGC)	 AG	370-483	GT	CGG
(GCG)	 AG	931-1035	TT	GAT
-recovered Augustus_model.g41574.t1, terminal, 931, 1035
-recovered Augustus_model.g41574.t1, internal, 370, 483
Valid prediction for snap_scaffold_1195-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3000
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support