-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1194

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 102, 400
Sorry, prediction snap_scaffold_1194-snap.1-T1 fails validation.
(GTC)	 AG	102-400	GT	CAG
(GTC)	 AG	1945-1988	GT	AAG
-recovered snap_scaffold_1194-snap.1-T1, terminal, 1945, 1988
-recovered snap_scaffold_1194-snap.1-T1, internal, 102, 400
-recovered snap_scaffold_1194-snap.1-T1, internal, 1945, 1988
Couldn't classify 123, 140
Sorry, prediction GeneMark_model.109019_t fails validation.
(GGG)	 AG	123-140	GT	GGG
(ACC)	 AG	164-196	GT	CAG
(GGG)	 AG	218-307	GT	AGG
(GAC)	 AG	330-335	GT	AGG
(GAG)	 AG	369-407	GT	CCG
(CAT)	 AG	430-445	GT	AAG
(AGA)	 AG	502-543	TG	GAT
-recovered GeneMark_model.109019_t, terminal, 502, 543
-recovered GeneMark_model.109019_t, internal, 123, 140
-recovered GeneMark_model.109019_t, internal, 164, 196
-recovered GeneMark_model.109019_t, internal, 218, 307
-recovered GeneMark_model.109019_t, internal, 330, 335
-recovered GeneMark_model.109019_t, internal, 369, 407
-recovered GeneMark_model.109019_t, internal, 430, 445

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3000
-exon list size: 18


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support