-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1193

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2911, 2973
Sorry, prediction GeneMark_model.109018_t fails validation.
(ATG)	 GT	2754-2767	GT	GAG
(AGA)	 AG	2785-2790	GT	AGG
(AGA)	 AG	2814-2852	GT	GAG
(AGA)	 AG	2877-2888	GT	GAG
(AGA)	 AG	2911-2973	GT	GAG
-recovered GeneMark_model.109018_t, initial, 2754, 2767
-recovered GeneMark_model.109018_t, internal, 2785, 2790
-recovered GeneMark_model.109018_t, internal, 2814, 2852
-recovered GeneMark_model.109018_t, internal, 2877, 2888
-recovered GeneMark_model.109018_t, internal, 2911, 2973

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1523, 2032
Couldn't classify 2869, 2978
Sorry, prediction snap_scaffold_1193-snap.1-T1 fails validation.
(AGA)	 AG	1523-2032	GT	GAG
(AAG)	 AG	2869-2978	GT	CGG
-recovered snap_scaffold_1193-snap.1-T1, internal, 1523, 2032
-recovered snap_scaffold_1193-snap.1-T1, internal, 2869, 2978
Valid prediction for GeneMark_model.109017_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3000
-exon list size: 18


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support