-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1191

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41573.t1
Couldn't classify 265, 454
Couldn't classify 896, 1116
Sorry, prediction GeneMark_model.109015_t fails validation.
(GAG)	 AG	265-454	GT	AGG
(AGA)	 AG	571-646	GT	AGG
(ACG)	 AG	703-711	GT	GAG
(GCG)	 AG	735-869	GT	GAG
(AGA)	 AG	896-1116	GT	GGG
add_exon() Sorry, GeneMark_model.109015_t 265-454-terminal-3 is invalid.
-recovered GeneMark_model.109015_t, terminal, 265, 454
-recovered GeneMark_model.109015_t, internal, 265, 454
-recovered GeneMark_model.109015_t, internal, 571, 646
-recovered GeneMark_model.109015_t, internal, 703, 711
-recovered GeneMark_model.109015_t, internal, 735, 869
-recovered GeneMark_model.109015_t, internal, 896, 1116
Valid prediction for GlimmerHMM_glimmerT_62517-T1
Valid prediction for snap_scaffold_1191-snap.2-T1
Couldn't classify 265, 454
Sorry, prediction snap_scaffold_1191-snap.1-T1 fails validation.
(GAG)	 AG	265-454	GT	AGG
(GGG)	 AG	536-663	AT	GAA
add_exon() Sorry, snap_scaffold_1191-snap.1-T1 265-454-terminal-3 is invalid.
-recovered snap_scaffold_1191-snap.1-T1, terminal, 265, 454
-recovered snap_scaffold_1191-snap.1-T1, terminal, 536, 663
-recovered snap_scaffold_1191-snap.1-T1, internal, 265, 454

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3000
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support