-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1190

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1795, 2268
Sorry, prediction snap_scaffold_1190-snap.1-T1 fails validation.
(ATG)	 GG	1011-1244	GT	GAG
(AAA)	 AG	1795-2268	GT	ATG
-recovered snap_scaffold_1190-snap.1-T1, initial, 1011, 1244
-recovered snap_scaffold_1190-snap.1-T1, internal, 1795, 2268
Couldn't classify 2605, 2682
Sorry, prediction GeneMark_model.109014_t fails validation.
(ATG)	 GG	843-964	GT	TCG
(GGA)	 AG	990-1127	GC	AAG
(CGG)	 AG	1149-1244	GT	GAG
(AGA)	 AG	1441-1524	GT	CAG
(ACA)	 AG	1998-2447	GT	GGG
(AGA)	 AG	2548-2553	GC	GGG
(GAG)	 AG	2576-2581	GT	GAG
(GGA)	 AG	2605-2682	GT	GAG
-recovered GeneMark_model.109014_t, initial, 843, 964
-recovered GeneMark_model.109014_t, terminal, 2576, 2581
-recovered GeneMark_model.109014_t, internal, 990, 1127
-recovered GeneMark_model.109014_t, internal, 1149, 1244
-recovered GeneMark_model.109014_t, internal, 1441, 1524
-recovered GeneMark_model.109014_t, internal, 1998, 2447
-recovered GeneMark_model.109014_t, internal, 2548, 2553
-recovered GeneMark_model.109014_t, internal, 2576, 2581
-recovered GeneMark_model.109014_t, internal, 2605, 2682

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109013_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3000
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support