-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1189

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 103, 135
Sorry, prediction GeneMark_model.109012_t fails validation.
(AGA)	 AG	103-135	GT	ATG
(AGG)	 AG	159-455	GT	CCG
(AGG)	 AG	541-670	GT	CCG
(GTG)	 AG	1210-2700	GC	AAG
-recovered GeneMark_model.109012_t, terminal, 1210, 2700
-recovered GeneMark_model.109012_t, internal, 103, 135
-recovered GeneMark_model.109012_t, internal, 159, 455
-recovered GeneMark_model.109012_t, internal, 541, 670
-recovered GeneMark_model.109012_t, internal, 1210, 2700
Valid prediction for Augustus_model.g41572.t1
Valid prediction for snap_scaffold_1189-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_62516-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3000
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support