-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1187

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 93, 339
Couldn't classify 2038, 2081
Sorry, prediction GeneMark_model.109010_t fails validation.
(CCA)	 AG	93-339	GT	AGG
(CCC)	 AG	461-564	GT	CTG
(ATC)	 AG	860-955	GT	GAG
(CCG)	 AG	1002-1038	GT	GAG
(AGG)	 AG	1063-1068	GT	CAG
(AGT)	 AG	1098-1145	GT	GTG
(TGT)	 AG	2038-2081	GT	CAG
-recovered GeneMark_model.109010_t, internal, 93, 339
-recovered GeneMark_model.109010_t, internal, 461, 564
-recovered GeneMark_model.109010_t, internal, 860, 955
-recovered GeneMark_model.109010_t, internal, 1002, 1038
-recovered GeneMark_model.109010_t, internal, 1063, 1068
-recovered GeneMark_model.109010_t, internal, 1098, 1145
-recovered GeneMark_model.109010_t, internal, 2038, 2081
Couldn't classify 93, 345
Sorry, prediction Augustus_model.g41570.t1 fails validation.
(CCA)	 AG	93-345	GT	AGG
(GTG)	 AG	576-631	GT	GGG
(ATC)	 AG	860-975	AT	GAA
-recovered Augustus_model.g41570.t1, terminal, 860, 975
-recovered Augustus_model.g41570.t1, internal, 93, 345
-recovered Augustus_model.g41570.t1, internal, 576, 631
Valid prediction for GlimmerHMM_glimmerT_62515-T1
Couldn't classify 962, 1143
Sorry, prediction snap_scaffold_1187-snap.2-T1 fails validation.
(ATG)	 CG	269-345	GT	AGG
(ACC)	 AG	962-1143	GT	CAG
-recovered snap_scaffold_1187-snap.2-T1, initial, 269, 345
-recovered snap_scaffold_1187-snap.2-T1, internal, 962, 1143
Valid prediction for snap_scaffold_1187-snap.1-T1
add_exon() Sorry, snap_scaffold_1187-snap.1-T1 67-266-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3001
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support