-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1184

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62513-T1
Couldn't classify 273, 349
Sorry, prediction GeneMark_model.109008_t fails validation.
(GCT)	 AG	273-349	GT	TGG
(GAG)	 AG	540-662	GT	TGG
(AGG)	 AG	2258-2312	GT	AGG
(GCC)	 AG	2333-2376	CA	GAC
-recovered GeneMark_model.109008_t, terminal, 2333, 2376
-recovered GeneMark_model.109008_t, internal, 273, 349
-recovered GeneMark_model.109008_t, internal, 540, 662
-recovered GeneMark_model.109008_t, internal, 2258, 2312
Valid prediction for GlimmerHMM_glimmerT_62514-T1
Couldn't classify 187, 349
Sorry, prediction Augustus_model.g41568.t1 fails validation.
(GGA)	 AG	187-349	GT	TGG
(GAG)	 AG	540-662	GT	TGG
(GGG)	 AG	2161-2268	TG	GAT
-recovered Augustus_model.g41568.t1, terminal, 2161, 2268
-recovered Augustus_model.g41568.t1, internal, 187, 349
-recovered Augustus_model.g41568.t1, internal, 540, 662
Couldn't classify 187, 349
Sorry, prediction snap_scaffold_1184-snap.2-T1 fails validation.
(GGA)	 AG	187-349	GT	TGG
(GAG)	 AG	540-662	GT	TGG
(ACC)	 AG	1168-1176	TC	GAT
-recovered snap_scaffold_1184-snap.2-T1, terminal, 1168, 1176
-recovered snap_scaffold_1184-snap.2-T1, internal, 187, 349
-recovered snap_scaffold_1184-snap.2-T1, internal, 540, 662
Couldn't classify 188, 349
Couldn't classify 1161, 1214
Sorry, prediction pasa_asmbl_7397.p1 fails validation.
(GAC)	 GG	188-349	GT	TGG
(GAG)	 AG	540-662	GT	TGG
(GTG)	 AG	1161-1214	NN	NNN
-recovered pasa_asmbl_7397.p1, internal, 540, 662

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 812, 859
Couldn't classify 2727, 2846
Sorry, prediction snap_scaffold_1184-snap.1-T1 fails validation.
(GCC)	 AG	812-859	GT	TGG
(AGT)	 AG	2356-2391	GT	AGG
(GGG)	 AG	2727-2846	GT	TAG
-recovered snap_scaffold_1184-snap.1-T1, internal, 812, 859
-recovered snap_scaffold_1184-snap.1-T1, internal, 2356, 2391
-recovered snap_scaffold_1184-snap.1-T1, internal, 2727, 2846

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2196, rend_intergenic: 187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3007
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2196, rend_intergenic: 187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support