-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1183

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 559, 637
Couldn't classify 2737, 2813
Sorry, prediction snap_scaffold_1183-snap.1-T1 fails validation.
(GTT)	 AG	559-637	GT	AAG
(AAC)	 AG	959-1041	GT	TGG
(GTG)	 AG	2043-2119	GT	CGG
(GTG)	 AG	2553-2680	GT	TTG
(AAC)	 AG	2737-2813	GT	TGG
-recovered snap_scaffold_1183-snap.1-T1, internal, 559, 637
-recovered snap_scaffold_1183-snap.1-T1, internal, 959, 1041
-recovered snap_scaffold_1183-snap.1-T1, internal, 2043, 2119
-recovered snap_scaffold_1183-snap.1-T1, internal, 2553, 2680
-recovered snap_scaffold_1183-snap.1-T1, internal, 2737, 2813
Couldn't classify 959, 1041
Sorry, prediction GeneMark_model.109006_t fails validation.
(AAC)	 AG	959-1041	GT	TGG
(GGG)	 AG	1806-1841	GT	GGG
(GGG)	 AG	1874-1910	AA	GAA
-recovered GeneMark_model.109006_t, terminal, 1874, 1910
-recovered GeneMark_model.109006_t, internal, 959, 1041
-recovered GeneMark_model.109006_t, internal, 1806, 1841
Valid prediction for GlimmerHMM_glimmerT_62512-T1
Valid prediction for Augustus_model.g41567.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 46, 223
Sorry, prediction GeneMark_model.109007_t fails validation.
(GCA)	 AG	46-223	GT	ATG
(GGC)	 AG	944-997	CT	GAC
-recovered GeneMark_model.109007_t, terminal, 944, 997
-recovered GeneMark_model.109007_t, internal, 46, 223

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3007
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support