-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1181

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 76, 90
Couldn't classify 1216, 1265
Sorry, prediction GeneMark_model.109004_t fails validation.
(GAT)	 AG	76-90	GT	CAG
(AGT)	 AG	120-134	GT	CAG
(AGA)	 AG	166-180	GT	GAG
(AGT)	 AG	262-276	GT	GAG
(ACA)	 AG	300-326	GT	GGG
(GAG)	 AG	1063-1072	GT	GGG
(CTG)	 AG	1216-1265	GT	GGG
-recovered GeneMark_model.109004_t, internal, 76, 90
-recovered GeneMark_model.109004_t, internal, 120, 134
-recovered GeneMark_model.109004_t, internal, 166, 180
-recovered GeneMark_model.109004_t, internal, 262, 276
-recovered GeneMark_model.109004_t, internal, 300, 326
-recovered GeneMark_model.109004_t, internal, 1063, 1072
-recovered GeneMark_model.109004_t, internal, 1216, 1265

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3019
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support