-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1179

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 57, 66
Couldn't classify 2648, 2656
Sorry, prediction GeneMark_model.109002_t fails validation.
(CAC)	 AG	57-66	GT	ATG
(TCC)	 AG	91-180	GT	GGG
(GGA)	 AG	205-210	GT	GGG
(GAC)	 AG	238-306	GC	GAG
(ATG)	 AG	362-382	GT	GAG
(AGA)	 AG	404-565	GT	GAG
(AGA)	 AG	589-651	GC	ATG
(AGA)	 AG	1874-1909	GT	AGG
(AGA)	 AG	1996-2031	GT	AGG
(AGT)	 AG	2054-2122	GT	AGG
(GAG)	 AG	2377-2520	GT	AGG
(GAA)	 AG	2543-2623	GT	TGG
(TCT)	 AG	2648-2656	GT	CGG
-recovered GeneMark_model.109002_t, initial, 362, 382
-recovered GeneMark_model.109002_t, internal, 57, 66
-recovered GeneMark_model.109002_t, internal, 91, 180
-recovered GeneMark_model.109002_t, internal, 205, 210
-recovered GeneMark_model.109002_t, internal, 238, 306
-recovered GeneMark_model.109002_t, internal, 362, 382
-recovered GeneMark_model.109002_t, internal, 404, 565
-recovered GeneMark_model.109002_t, internal, 589, 651
-recovered GeneMark_model.109002_t, internal, 1874, 1909
-recovered GeneMark_model.109002_t, internal, 1996, 2031
-recovered GeneMark_model.109002_t, internal, 2054, 2122
-recovered GeneMark_model.109002_t, internal, 2377, 2520
-recovered GeneMark_model.109002_t, internal, 2543, 2623
-recovered GeneMark_model.109002_t, internal, 2648, 2656

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3024
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support