-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1178

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 763, 825
Sorry, prediction snap_scaffold_1178-snap.2-T1 fails validation.
(ACT)	 AG	763-825	GT	AGG
(CTT)	 AG	882-984	GT	TGG
(CTC)	 AG	1359-1415	GT	ATG
(TAC)	 AG	1547-1636	GT	CAG
(CTC)	 AG	2771-2980	GA	GAG
-recovered snap_scaffold_1178-snap.2-T1, terminal, 2771, 2980
-recovered snap_scaffold_1178-snap.2-T1, internal, 763, 825
-recovered snap_scaffold_1178-snap.2-T1, internal, 882, 984
-recovered snap_scaffold_1178-snap.2-T1, internal, 1359, 1415
-recovered snap_scaffold_1178-snap.2-T1, internal, 1547, 1636
Couldn't classify 2998, 3015
Sorry, prediction GeneMark_model.109001_t fails validation.
(ATG)	 AC	1622-1638	GT	GTG
(AGA)	 AG	2434-2550	GT	TTG
(ACA)	 AG	2588-2653	GT	GAG
(GAG)	 AG	2693-2788	GT	GTG
(AAG)	 AG	2836-2976	GT	GAG
(CGT)	 AG	2998-3015	GT	GAG
-recovered GeneMark_model.109001_t, initial, 1622, 1638
-recovered GeneMark_model.109001_t, internal, 2434, 2550
-recovered GeneMark_model.109001_t, internal, 2588, 2653
-recovered GeneMark_model.109001_t, internal, 2693, 2788
-recovered GeneMark_model.109001_t, internal, 2836, 2976
-recovered GeneMark_model.109001_t, internal, 2998, 3015

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1396, 1493
Couldn't classify 2406, 2483
Sorry, prediction pasa_asmbl_7391.p1 fails validation.
(NNN)	 NN	1396-1493	GT	AGG
(ACA)	 AG	1600-1723	GT	TGG
(GTG)	 AG	2093-2206	GT	AGG
(GTG)	 AG	2406-2483	GA	GTG
-recovered pasa_asmbl_7391.p1, internal, 1600, 1723
-recovered pasa_asmbl_7391.p1, internal, 2093, 2206
Couldn't classify 2406, 2481
Sorry, prediction GeneMark_model.109000_t fails validation.
(ATG)	 GG	1462-1493	GT	AGG
(ACA)	 AG	1600-1723	GT	TGG
(GTG)	 AG	2093-2206	GT	AGG
(GTG)	 AG	2406-2481	GT	AGG
-recovered GeneMark_model.109000_t, initial, 1462, 1493
-recovered GeneMark_model.109000_t, internal, 1600, 1723
-recovered GeneMark_model.109000_t, internal, 2093, 2206
-recovered GeneMark_model.109000_t, internal, 2406, 2481
Couldn't classify 221, 298
Sorry, prediction GlimmerHMM_glimmerT_62511-T1 fails validation.
(GAC)	 AG	221-298	GT	AGG
(GAT)	 AG	1604-1723	GT	TGG
(GTG)	 AG	2093-2239	CG	GAC
-recovered GlimmerHMM_glimmerT_62511-T1, terminal, 2093, 2239
-recovered GlimmerHMM_glimmerT_62511-T1, internal, 221, 298
-recovered GlimmerHMM_glimmerT_62511-T1, internal, 1604, 1723
Couldn't classify 221, 298
Couldn't classify 2406, 2481
Sorry, prediction Augustus_model.g41565.t1 fails validation.
(GAC)	 AG	221-298	GT	AGG
(ATG)	 AG	1441-1493	GT	AGG
(ACA)	 AG	1600-1723	GT	TGG
(GTG)	 AG	2093-2206	GT	AGG
(GTG)	 AG	2406-2481	GT	AGG
-recovered Augustus_model.g41565.t1, initial, 1441, 1493
-recovered Augustus_model.g41565.t1, internal, 221, 298
-recovered Augustus_model.g41565.t1, internal, 1441, 1493
-recovered Augustus_model.g41565.t1, internal, 1600, 1723
-recovered Augustus_model.g41565.t1, internal, 2093, 2206
-recovered Augustus_model.g41565.t1, internal, 2406, 2481
Couldn't classify 221, 298
Couldn't classify 2406, 2481
Sorry, prediction snap_scaffold_1178-snap.1-T1 fails validation.
(GAC)	 AG	221-298	GT	AGG
(ATG)	 AG	1441-1493	GT	AGG
(ACA)	 AG	1600-1723	GT	TGG
(GTG)	 AG	2093-2206	GT	AGG
(GTG)	 AG	2406-2481	GT	AGG
-recovered snap_scaffold_1178-snap.1-T1, initial, 1441, 1493
-recovered snap_scaffold_1178-snap.1-T1, internal, 221, 298
-recovered snap_scaffold_1178-snap.1-T1, internal, 1441, 1493
-recovered snap_scaffold_1178-snap.1-T1, internal, 1600, 1723
-recovered snap_scaffold_1178-snap.1-T1, internal, 2093, 2206
-recovered snap_scaffold_1178-snap.1-T1, internal, 2406, 2481

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2822, rend_intergenic: 763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3042
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2822, rend_intergenic: 763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support