-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1176

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1017, 1097
Sorry, prediction GeneMark_model.108996_t fails validation.
(GGG)	 AG	1017-1097	GT	GAG
(GGT)	 AG	1121-1150	GT	GAG
(GAG)	 AG	1174-1215	GT	GGG
(GAG)	 AG	1236-1298	GT	GGG
(AGG)	 AG	1321-1416	GT	GGG
(AGA)	 AG	1442-1522	GT	CAG
(TTT)	 AG	1547-1688	CT	AAC
-recovered GeneMark_model.108996_t, terminal, 1547, 1688
-recovered GeneMark_model.108996_t, internal, 1017, 1097
-recovered GeneMark_model.108996_t, internal, 1121, 1150
-recovered GeneMark_model.108996_t, internal, 1174, 1215
-recovered GeneMark_model.108996_t, internal, 1236, 1298
-recovered GeneMark_model.108996_t, internal, 1321, 1416
-recovered GeneMark_model.108996_t, internal, 1442, 1522
Valid prediction for GeneMark_model.108997_t
Couldn't classify 951, 1291
Sorry, prediction snap_scaffold_1176-snap.1-T1 fails validation.
(ACG)	 AG	951-1291	GT	GGG
(GGG)	 AG	1297-1522	GT	CAG
(AGG)	 AG	2865-3030	GA	GAG
-recovered snap_scaffold_1176-snap.1-T1, terminal, 2865, 3030
-recovered snap_scaffold_1176-snap.1-T1, internal, 951, 1291
-recovered snap_scaffold_1176-snap.1-T1, internal, 1297, 1522
Sorry, intron length (4) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3048
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support