-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1175

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108995_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2956, 3033
Sorry, prediction GeneMark_model.108994_t fails validation.
(ATG)	 AG	2180-2226	GT	AGG
(AGA)	 AG	2257-2313	GT	GGG
(GGG)	 AG	2345-2414	GT	GAG
(GGG)	 AG	2443-2534	GT	GAG
(GAA)	 AG	2956-3033	GC	GGG
-recovered GeneMark_model.108994_t, initial, 2180, 2226
-recovered GeneMark_model.108994_t, internal, 2180, 2226
-recovered GeneMark_model.108994_t, internal, 2257, 2313
-recovered GeneMark_model.108994_t, internal, 2345, 2414
-recovered GeneMark_model.108994_t, internal, 2443, 2534
-recovered GeneMark_model.108994_t, internal, 2956, 3033
Couldn't classify 1315, 1455
Sorry, prediction snap_scaffold_1175-snap.1-T1 fails validation.
(TAC)	 AG	1315-1455	GT	CGG
(TAG)	 AG	2474-2538	TT	GAT
-recovered snap_scaffold_1175-snap.1-T1, terminal, 2474, 2538
-recovered snap_scaffold_1175-snap.1-T1, internal, 1315, 1455

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3052
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support