-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1172

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1172-snap.1-T1
add_exon() Sorry, snap_scaffold_1172-snap.1-T1 2055-2580-terminal-1 is invalid.
Couldn't classify 38, 592
Sorry, prediction GeneMark_model.108991_t fails validation.
(ACA)	 AG	38-592	GT	AGG
(AGG)	 AG	617-628	GT	AGG
(GAT)	 AG	651-680	GT	GAG
(CCT)	 AG	1997-2089	GT	GGG
(AGG)	 AG	2121-2580	AC	GAA
-recovered GeneMark_model.108991_t, terminal, 2121, 2580
-recovered GeneMark_model.108991_t, internal, 38, 592
-recovered GeneMark_model.108991_t, internal, 617, 628
-recovered GeneMark_model.108991_t, internal, 651, 680
-recovered GeneMark_model.108991_t, internal, 1997, 2089

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3068
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support