-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_117 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106621_t add_exon() Sorry, GeneMark_model.106621_t 318-567-terminal-1 is invalid. Valid prediction for Augustus_model.g40792.t1 add_exon() Sorry, Augustus_model.g40792.t1 318-567-terminal-1 is invalid. Couldn't classify 6842, 6929 Couldn't classify 14650, 14794 Sorry, prediction pasa_asmbl_7388.p1 fails validation. (GAG) CA 6842-6929 GT GGG (CTC) AG 7835-7997 GT GGG (GGA) AG 8132-8231 GT AGG (TAT) AG 9249-9374 GT AGG (TCT) AG 12062-12208 GT CGG (CAC) AG 12409-12522 GT AGG (GAC) AG 13541-13677 GT AGG (CAA) AG 14650-14794 GT AGG -recovered pasa_asmbl_7388.p1, internal, 7835, 7997 -recovered pasa_asmbl_7388.p1, internal, 8132, 8231 -recovered pasa_asmbl_7388.p1, internal, 9249, 9374 -recovered pasa_asmbl_7388.p1, internal, 12062, 12208 -recovered pasa_asmbl_7388.p1, internal, 12409, 12522 -recovered pasa_asmbl_7388.p1, internal, 13541, 13677 -recovered pasa_asmbl_7388.p1, internal, 14650, 14794 Valid prediction for GlimmerHMM_glimmerT_61322-T1 add_exon() Sorry, GlimmerHMM_glimmerT_61322-T1 318-567-terminal-1 is invalid. Valid prediction for snap_scaffold_117-snap.2-T1 Valid prediction for GeneMark_model.106626_t Valid prediction for GeneMark_model.106629_t Valid prediction for snap_scaffold_117-snap.5-T1 Couldn't classify 14650, 14794 Sorry, prediction snap_scaffold_117-snap.6-T1 fails validation. (ATG) CT 12871-12933 GT AGG (GAC) AG 13541-13677 GT AGG (GGT) AG 13944-14030 GT AGG (CAA) AG 14650-14794 GT AGG -recovered snap_scaffold_117-snap.6-T1, initial, 12871, 12933 -recovered snap_scaffold_117-snap.6-T1, internal, 13541, 13677 -recovered snap_scaffold_117-snap.6-T1, internal, 13944, 14030 -recovered snap_scaffold_117-snap.6-T1, internal, 14650, 14794 Valid prediction for GeneMark_model.106623_t Valid prediction for GeneMark_model.106628_t Couldn't classify 14650, 14745 Sorry, prediction GlimmerHMM_glimmerT_61324-T1 fails validation. (ATG) AA 4648-4672 GT GAG (CAG) AG 6064-6201 GT GAG (AGG) AG 6843-6929 GT GGG (CTC) AG 7835-7997 GT GGG (GGA) AG 8132-8231 GT AGG (TAT) AG 9249-9374 GT AGG (TCT) AG 12062-12208 GT CGG (CAC) AG 12409-12522 GT AGG (GAC) AG 13541-13677 GT AGG (CAA) AG 14650-14745 GT CTG -recovered GlimmerHMM_glimmerT_61324-T1, initial, 4648, 4672 -recovered GlimmerHMM_glimmerT_61324-T1, internal, 6064, 6201 -recovered GlimmerHMM_glimmerT_61324-T1, internal, 6843, 6929 -recovered GlimmerHMM_glimmerT_61324-T1, internal, 7835, 7997 -recovered GlimmerHMM_glimmerT_61324-T1, internal, 8132, 8231 -recovered GlimmerHMM_glimmerT_61324-T1, internal, 9249, 9374 -recovered GlimmerHMM_glimmerT_61324-T1, internal, 12062, 12208 -recovered GlimmerHMM_glimmerT_61324-T1, internal, 12409, 12522 -recovered GlimmerHMM_glimmerT_61324-T1, internal, 13541, 13677 -recovered GlimmerHMM_glimmerT_61324-T1, internal, 14650, 14745 Couldn't classify 14650, 14828 Sorry, prediction Augustus_model.g40793.t1 fails validation. (ATG) AC 5804-5834 GT AGG (CAG) AG 6064-6201 GT GAG (AGG) AG 6843-6929 GT GGG (CTC) AG 7835-7997 GT GGG (GGA) AG 8132-8231 GT AGG (TAT) AG 9249-9374 GT AGG (TCT) AG 12062-12208 GT CGG (CAC) AG 12409-12522 GT AGG (GAC) AG 13541-13677 GT AGG (CAA) AG 14650-14828 CC -recovered Augustus_model.g40793.t1, initial, 5804, 5834 -recovered Augustus_model.g40793.t1, internal, 6064, 6201 -recovered Augustus_model.g40793.t1, internal, 6843, 6929 -recovered Augustus_model.g40793.t1, internal, 7835, 7997 -recovered Augustus_model.g40793.t1, internal, 8132, 8231 -recovered Augustus_model.g40793.t1, internal, 9249, 9374 -recovered Augustus_model.g40793.t1, internal, 12062, 12208 -recovered Augustus_model.g40793.t1, internal, 12409, 12522 -recovered Augustus_model.g40793.t1, internal, 13541, 13677 Valid prediction for snap_scaffold_117-snap.1-T1 add_exon() Sorry, snap_scaffold_117-snap.1-T1 318-567-terminal-1 is invalid. -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106624_t Valid prediction for GeneMark_model.106627_t Valid prediction for GlimmerHMM_glimmerT_61323-T1 Valid prediction for GeneMark_model.106625_t Valid prediction for snap_scaffold_117-snap.3-T1 Valid prediction for GeneMark_model.106622_t Valid prediction for snap_scaffold_117-snap.4-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9735, rend_intergenic: 6097 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 12267, rend_intergenic: 10602 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 14828 -exon list size: 81 building trellis 1.2 2.4 3.6 4.8 6.0 7.2 8.4 9.6 10.8 12.0 13.3 14.5 15.7 16.9 18.1 19.3 20.5 21.7 22.9 24.1 25.3 26.5 27.7 28.9 30.1 31.3 32.5 33.7 34.9 36.1 37.3 38.6 39.8 41.0 42.2 43.4 44.6 45.8 47.0 48.2 49.4 50.6 51.8 53.0 54.2 55.4 56.6 57.8 59.0 60.2 61.4 62.7 63.9 65.1 66.3 67.5 68.7 69.9 71.1 72.3 73.5 74.7 75.9 77.1 78.3 79.5 80.7 81.9 83.1 84.3 85.5 86.7 88.0 89.2 90.4 91.6 92.8 94.0 95.2 96.4 97.6 98.8 -found 2 predictions from path traversal Error with prediction: snap lend_intergenic: 9735, rend_intergenic: 6097 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 12267, rend_intergenic: 10602 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 2 predictions persist after filtering for low support