-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1168

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2951, 3046
Sorry, prediction Augustus_model.g41563.t1 fails validation.
(ATG)	 GC	2475-2618	GT	AGG
(GGT)	 AG	2951-3046	GT	AGG
-recovered Augustus_model.g41563.t1, initial, 2475, 2618
-recovered Augustus_model.g41563.t1, internal, 2951, 3046
Couldn't classify 2951, 3046
Sorry, prediction snap_scaffold_1168-snap.1-T1 fails validation.
(ATG)	 CA	286-395	GT	TTG
(TCA)	 AG	2462-2618	GT	AGG
(GGT)	 AG	2951-3046	GT	AGG
-recovered snap_scaffold_1168-snap.1-T1, initial, 286, 395
-recovered snap_scaffold_1168-snap.1-T1, internal, 2462, 2618
-recovered snap_scaffold_1168-snap.1-T1, internal, 2951, 3046
Valid prediction for GeneMark_model.108989_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3076
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support