-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1167

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1167-snap.1-T1
Valid prediction for snap_scaffold_1167-snap.2-T1
Couldn't classify 750, 827
Couldn't classify 872, 937
Sorry, prediction GeneMark_model.108988_t fails validation.
(GAC)	 AG	750-827	GT	GAG
(AGC)	 AG	872-937	GT	CAG
-recovered GeneMark_model.108988_t, internal, 750, 827
-recovered GeneMark_model.108988_t, internal, 872, 937
Couldn't classify 775, 989
Sorry, prediction Augustus_model.g41562.t1 fails validation.
(AGC)	 AG	775-989	GT	TGG
(AAC)	 AG	1659-1756	GT	CAG
(GGA)	 AG	2131-2250	GA	GAG
-recovered Augustus_model.g41562.t1, terminal, 2131, 2250
-recovered Augustus_model.g41562.t1, internal, 775, 989
-recovered Augustus_model.g41562.t1, internal, 1659, 1756
Valid prediction for GlimmerHMM_glimmerT_62508-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3078
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support