-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1165

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 108, 195
Sorry, prediction GeneMark_model.108985_t fails validation.
(AGG)	 AG	108-195	GT	ATG
(GGC)	 AG	429-455	GT	ATG
(CAT)	 AG	1287-1460	GG	GAG
-recovered GeneMark_model.108985_t, terminal, 1287, 1460
-recovered GeneMark_model.108985_t, internal, 108, 195
-recovered GeneMark_model.108985_t, internal, 429, 455

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 105, 350
Sorry, prediction GeneMark_model.108986_t fails validation.
(AGG)	 AG	105-350	GT	AAG
(GGG)	 AG	1227-1316	GT	AAG
(AGG)	 AG	1347-1418	GT	CGG
(GGA)	 AG	1440-1572	TC	AGT
-recovered GeneMark_model.108986_t, terminal, 1440, 1572
-recovered GeneMark_model.108986_t, internal, 105, 350
-recovered GeneMark_model.108986_t, internal, 1227, 1316
-recovered GeneMark_model.108986_t, internal, 1347, 1418
Valid prediction for snap_scaffold_1165-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3086
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support