-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1164

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1164-snap.3-T1
add_exon() Sorry, snap_scaffold_1164-snap.3-T1 89-533-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62507-T1
Valid prediction for GeneMark_model.108984_t
Couldn't classify 2877, 3024
Sorry, prediction snap_scaffold_1164-snap.1-T1 fails validation.
(ATG)	 AG	1950-2067	GT	AGG
(CTT)	 AG	2179-2393	GT	AGG
(ATC)	 AG	2877-3024	GT	TAG
-recovered snap_scaffold_1164-snap.1-T1, initial, 1950, 2067
-recovered snap_scaffold_1164-snap.1-T1, internal, 1950, 2067
-recovered snap_scaffold_1164-snap.1-T1, internal, 2179, 2393
-recovered snap_scaffold_1164-snap.1-T1, internal, 2877, 3024
Valid prediction for snap_scaffold_1164-snap.2-T1
Couldn't classify 2877, 3024
Sorry, prediction Augustus_model.g41561.t1 fails validation.
(ATG)	 AA	72-376	GT	AGG
(AAA)	 AG	806-875	GT	GGG
(GAG)	 AG	1017-1223	GT	AGG
(AAG)	 AG	1533-1665	GT	CTG
(CTG)	 AG	1936-2067	GT	AGG
(CTT)	 AG	2179-2393	GT	AGG
(ATC)	 AG	2877-3024	GT	TAG
-recovered Augustus_model.g41561.t1, initial, 72, 376
-recovered Augustus_model.g41561.t1, internal, 806, 875
-recovered Augustus_model.g41561.t1, internal, 1017, 1223
-recovered Augustus_model.g41561.t1, internal, 1533, 1665
-recovered Augustus_model.g41561.t1, internal, 1936, 2067
-recovered Augustus_model.g41561.t1, internal, 2179, 2393
-recovered Augustus_model.g41561.t1, internal, 2877, 3024
Couldn't classify 2877, 3024
Sorry, prediction GeneMark_model.108983_t fails validation.
(ATG)	 AG	825-875	GT	GGG
(GAG)	 AG	1017-1223	GT	AGG
(AAG)	 AG	1533-1665	GT	CTG
(CTG)	 AG	1936-2067	GT	AGG
(CTT)	 AG	2179-2393	GT	AGG
(ATC)	 AG	2877-3024	GT	TAG
-recovered GeneMark_model.108983_t, initial, 825, 875
-recovered GeneMark_model.108983_t, internal, 825, 875
-recovered GeneMark_model.108983_t, internal, 1017, 1223
-recovered GeneMark_model.108983_t, internal, 1533, 1665
-recovered GeneMark_model.108983_t, internal, 1936, 2067
-recovered GeneMark_model.108983_t, internal, 2179, 2393
-recovered GeneMark_model.108983_t, internal, 2877, 3024

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3090
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support