-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1163

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 208, 284
Couldn't classify 1802, 1900
Sorry, prediction snap_scaffold_1163-snap.1-T1 fails validation.
(GGT)	 AG	208-284	GT	AGG
(AAC)	 AG	771-931	GT	TGG
(CAC)	 AG	1802-1900	GT	AGG
-recovered snap_scaffold_1163-snap.1-T1, internal, 208, 284
-recovered snap_scaffold_1163-snap.1-T1, internal, 771, 931
-recovered snap_scaffold_1163-snap.1-T1, internal, 1802, 1900
Couldn't classify 208, 284
Sorry, prediction Augustus_model.g41560.t1 fails validation.
(GGT)	 AG	208-284	GT	AGG
(GGC)	 AG	1648-1667	GT	GGG
(CAC)	 AG	1802-1900	GT	AGG
(GTA)	 AG	2105-2125	TT	AGT
-recovered Augustus_model.g41560.t1, terminal, 2105, 2125
-recovered Augustus_model.g41560.t1, internal, 208, 284
-recovered Augustus_model.g41560.t1, internal, 1648, 1667
-recovered Augustus_model.g41560.t1, internal, 1802, 1900

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 36, 50
Sorry, prediction GeneMark_model.108982_t fails validation.
(TAG)	 AG	36-50	GT	GAG
(AAG)	 AG	1045-1050	GT	GAG
(TGG)	 AG	1073-1087	GT	GGG
(GAG)	 AG	1113-1220	GT	GAG
(GAA)	 AG	1278-1292	GT	CTG
(GGA)	 AG	1539-1596	GC	GAG
-recovered GeneMark_model.108982_t, terminal, 1539, 1596
-recovered GeneMark_model.108982_t, internal, 36, 50
-recovered GeneMark_model.108982_t, internal, 1045, 1050
-recovered GeneMark_model.108982_t, internal, 1073, 1087
-recovered GeneMark_model.108982_t, internal, 1113, 1220
-recovered GeneMark_model.108982_t, internal, 1278, 1292
-recovered GeneMark_model.108982_t, internal, 1539, 1596
Valid prediction for GeneMark_model.108981_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3091
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support