-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1162

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1162-snap.1-T1
Valid prediction for snap_scaffold_1162-snap.2-T1
Couldn't classify 1756, 1771
Couldn't classify 3031, 3057
Sorry, prediction GeneMark_model.108980_t fails validation.
(AGA)	 AG	1756-1771	GT	CAG
(CCT)	 AG	2122-2142	GT	TGG
(ACG)	 AG	2183-2211	GT	GGG
(AGG)	 AG	2233-2238	GT	AGG
(GGA)	 AG	2272-2310	GT	AGG
(GAG)	 AG	2334-2393	GT	AGG
(AGG)	 AG	2424-2429	GT	GAG
(GGA)	 AG	2454-2522	GT	AGG
(AGG)	 AG	2571-2594	GT	GGG
(AGG)	 AG	2619-2648	GT	AGG
(GGA)	 AG	2682-2693	GC	GAG
(AGG)	 AG	2716-2742	GT	GAG
(AAT)	 AG	2771-2869	GT	AGG
(GGA)	 AG	2913-3002	GT	AGG
(ACA)	 AG	3031-3057	GT	TGG
-recovered GeneMark_model.108980_t, internal, 1756, 1771
-recovered GeneMark_model.108980_t, internal, 2122, 2142
-recovered GeneMark_model.108980_t, internal, 2183, 2211
-recovered GeneMark_model.108980_t, internal, 2233, 2238
-recovered GeneMark_model.108980_t, internal, 2272, 2310
-recovered GeneMark_model.108980_t, internal, 2334, 2393
-recovered GeneMark_model.108980_t, internal, 2424, 2429
-recovered GeneMark_model.108980_t, internal, 2454, 2522
-recovered GeneMark_model.108980_t, internal, 2571, 2594
-recovered GeneMark_model.108980_t, internal, 2619, 2648
-recovered GeneMark_model.108980_t, internal, 2682, 2693
-recovered GeneMark_model.108980_t, internal, 2716, 2742
-recovered GeneMark_model.108980_t, internal, 2771, 2869
-recovered GeneMark_model.108980_t, internal, 2913, 3002
-recovered GeneMark_model.108980_t, internal, 3031, 3057

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41559.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3097
-exon list size: 44


building trellis

2.2    
4.3    
6.5    
8.7    
10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support