-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1161

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 153, 189
Couldn't classify 3062, 3078
Sorry, prediction GeneMark_model.108979_t fails validation.
(AGC)	 AG	153-189	GT	GAG
(AGA)	 AG	643-657	GT	GGG
(AGG)	 AG	679-798	GT	GGG
(GGA)	 AG	1244-1441	GT	GGG
(GGA)	 AG	1473-1712	GT	GTG
(TGA)	 AG	1738-1755	GT	TGG
(GGA)	 AG	1779-1823	GT	CAG
(GAG)	 AG	1849-1854	GT	CAG
(GAG)	 AG	1880-1885	GT	CAG
(GAG)	 AG	1941-1946	GT	CAG
(AGG)	 AG	1976-1987	GT	CAG
(AGA)	 AG	2015-2038	GT	CAG
(AGA)	 AG	2068-2092	GT	TGG
(CTC)	 AG	2143-2190	GT	CTG
(CCA)	 AG	2222-2346	GT	AGG
(GTG)	 AG	2383-2397	GT	GTG
(GCG)	 AG	2447-2482	GT	GGG
(GCT)	 AG	3062-3078	GC	AGG
-recovered GeneMark_model.108979_t, internal, 153, 189
-recovered GeneMark_model.108979_t, internal, 643, 657
-recovered GeneMark_model.108979_t, internal, 679, 798
-recovered GeneMark_model.108979_t, internal, 1244, 1441
-recovered GeneMark_model.108979_t, internal, 1473, 1712
-recovered GeneMark_model.108979_t, internal, 1738, 1755
-recovered GeneMark_model.108979_t, internal, 1779, 1823
-recovered GeneMark_model.108979_t, internal, 1849, 1854
-recovered GeneMark_model.108979_t, internal, 1880, 1885
-recovered GeneMark_model.108979_t, internal, 1941, 1946
-recovered GeneMark_model.108979_t, internal, 1976, 1987
-recovered GeneMark_model.108979_t, internal, 2015, 2038
-recovered GeneMark_model.108979_t, internal, 2068, 2092
-recovered GeneMark_model.108979_t, internal, 2143, 2190
-recovered GeneMark_model.108979_t, internal, 2222, 2346
-recovered GeneMark_model.108979_t, internal, 2383, 2397
-recovered GeneMark_model.108979_t, internal, 2447, 2482
-recovered GeneMark_model.108979_t, internal, 3062, 3078

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 910, 1014
Sorry, prediction snap_scaffold_1161-snap.1-T1 fails validation.
(GGC)	 AG	910-1014	GT	ACG
(ATA)	 AG	2470-2613	GA	GAG
-recovered snap_scaffold_1161-snap.1-T1, terminal, 2470, 2613
-recovered snap_scaffold_1161-snap.1-T1, internal, 910, 1014

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3097
-exon list size: 48


building trellis

2.0    
4.0    
6.0    
8.0    
10.0    
12.0    
14.0    
16.0    
18.0    
20.0    
22.0    
24.0    
26.0    
28.0    
30.0    
32.0    
34.0    
36.0    
38.0    
40.0    
42.0    
44.0    
46.0    
48.0    
50.0    
52.0    
54.0    
56.0    
58.0    
60.0    
62.0    
64.0    
66.0    
68.0    
70.0    
72.0    
74.0    
76.0    
78.0    
80.0    
82.0    
84.0    
86.0    
88.0    
90.0    
92.0    
94.0    
96.0    
98.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support