-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1160

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62506-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62506-T1 1573-1763-terminal-1 is invalid.
Couldn't classify 199, 374
Couldn't classify 1573, 1716
Sorry, prediction snap_scaffold_1160-snap.2-T1 fails validation.
(AGG)	 AG	199-374	GT	ACG
(TGC)	 AG	389-505	GT	TCG
(ACG)	 AG	1573-1716	GT	AGG
-recovered snap_scaffold_1160-snap.2-T1, internal, 199, 374
-recovered snap_scaffold_1160-snap.2-T1, internal, 389, 505
-recovered snap_scaffold_1160-snap.2-T1, internal, 1573, 1716

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2640, 3050
Sorry, prediction pasa_asmbl_7387.p1 fails validation.
(CGA)	 CG	2640-3050	GT	AGG
Couldn't classify 1392, 1498
Couldn't classify 2581, 3101
Sorry, prediction Augustus_model.g41558.t1 fails validation.
(TGC)	 AG	1392-1498	GT	TGG
(GTG)	 AG	2581-3101		AG
-recovered Augustus_model.g41558.t1, internal, 1392, 1498
Couldn't classify 2581, 3086
Sorry, prediction GeneMark_model.108978_t fails validation.
(ATG)	 TA	462-478	GT	CAG
(GTT)	 AG	527-724	GT	GAG
(GGG)	 AG	750-782	GT	GAG
(TGC)	 AG	1392-1498	GT	TGG
(GTG)	 AG	2581-3086	GT	AGG
-recovered GeneMark_model.108978_t, initial, 462, 478
-recovered GeneMark_model.108978_t, internal, 527, 724
-recovered GeneMark_model.108978_t, internal, 750, 782
-recovered GeneMark_model.108978_t, internal, 1392, 1498
-recovered GeneMark_model.108978_t, internal, 2581, 3086
Couldn't classify 483, 793
Couldn't classify 2581, 3086
Sorry, prediction snap_scaffold_1160-snap.1-T1 fails validation.
(CTG)	 AG	483-793	GT	TAG
(TGC)	 AG	1392-1498	GT	TGG
(GTG)	 AG	2581-3086	GT	AGG
-recovered snap_scaffold_1160-snap.1-T1, internal, 483, 793
-recovered snap_scaffold_1160-snap.1-T1, internal, 1392, 1498
-recovered snap_scaffold_1160-snap.1-T1, internal, 2581, 3086

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2619, rend_intergenic: 199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3101
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2619, rend_intergenic: 199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support