-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1158

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 543, 671
Couldn't classify 2344, 2402
Sorry, prediction GeneMark_model.108977_t fails validation.
(AGC)	 AG	543-671	GT	AGG
(GAC)	 AG	835-893	GT	AGG
(GGA)	 AG	972-1157	GT	CAG
(CAG)	 AG	1186-1338	GT	CAG
(CAG)	 AG	1372-1506	GT	CAG
(CAG)	 AG	1745-1861	GT	CAG
(AGA)	 AG	2008-2061	GT	GGG
(AGA)	 AG	2090-2245	GT	GAG
(GGA)	 AG	2281-2310	GT	AGG
(TGA)	 AG	2344-2402	GT	TGG
-recovered GeneMark_model.108977_t, internal, 543, 671
-recovered GeneMark_model.108977_t, internal, 835, 893
-recovered GeneMark_model.108977_t, internal, 972, 1157
-recovered GeneMark_model.108977_t, internal, 1186, 1338
-recovered GeneMark_model.108977_t, internal, 1372, 1506
-recovered GeneMark_model.108977_t, internal, 1745, 1861
-recovered GeneMark_model.108977_t, internal, 2008, 2061
-recovered GeneMark_model.108977_t, internal, 2090, 2245
-recovered GeneMark_model.108977_t, internal, 2281, 2310
-recovered GeneMark_model.108977_t, internal, 2344, 2402

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3115
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support