-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1156

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2737, 2844
Sorry, prediction Augustus_model.g41557.t1 fails validation.
(ATG)	 AC	1318-1346	GT	AAG
(TGT)	 AG	1726-1946	GT	TGG
(CAG)	 AG	2410-2573	GT	AGG
(GCC)	 AG	2737-2844	GT	AGG
-recovered Augustus_model.g41557.t1, initial, 1318, 1346
-recovered Augustus_model.g41557.t1, internal, 1726, 1946
-recovered Augustus_model.g41557.t1, internal, 2410, 2573
-recovered Augustus_model.g41557.t1, internal, 2737, 2844
Couldn't classify 113, 130
Sorry, prediction GeneMark_model.108974_t fails validation.
(ATC)	 AG	113-130	GT	AGG
(CAG)	 AG	200-215	GT	GGG
(GTC)	 AG	602-617	GT	CTG
(CCT)	 AG	640-1104	AG	GAA
-recovered GeneMark_model.108974_t, terminal, 640, 1104
-recovered GeneMark_model.108974_t, internal, 113, 130
-recovered GeneMark_model.108974_t, internal, 200, 215
-recovered GeneMark_model.108974_t, internal, 602, 617
Couldn't classify 1726, 1946
Couldn't classify 2737, 2844
Sorry, prediction snap_scaffold_1156-snap.1-T1 fails validation.
(TGT)	 AG	1726-1946	GT	TGG
(CAG)	 AG	2410-2573	GT	AGG
(GCC)	 AG	2737-2844	GT	AGG
-recovered snap_scaffold_1156-snap.1-T1, internal, 1726, 1946
-recovered snap_scaffold_1156-snap.1-T1, internal, 2410, 2573
-recovered snap_scaffold_1156-snap.1-T1, internal, 2737, 2844
Couldn't classify 2737, 2844
Sorry, prediction GlimmerHMM_glimmerT_62505-T1 fails validation.
(ATG)	 AG	1916-1946	GT	TGG
(CAG)	 AG	2410-2573	GT	AGG
(GCC)	 AG	2737-2844	GT	AGG
-recovered GlimmerHMM_glimmerT_62505-T1, initial, 1916, 1946
-recovered GlimmerHMM_glimmerT_62505-T1, internal, 1916, 1946
-recovered GlimmerHMM_glimmerT_62505-T1, internal, 2410, 2573
-recovered GlimmerHMM_glimmerT_62505-T1, internal, 2737, 2844

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 301, 389
Sorry, prediction GeneMark_model.108975_t fails validation.
(CTC)	 AG	301-389	GT	GGG
(GGA)	 AG	587-649	GT	AGG
(GGG)	 AG	729-833	GC	AGG
(AGA)	 AG	865-1078	GT	CAG
(TGG)	 AG	1175-1366	TG	AGT
-recovered GeneMark_model.108975_t, terminal, 1175, 1366
-recovered GeneMark_model.108975_t, internal, 301, 389
-recovered GeneMark_model.108975_t, internal, 587, 649
-recovered GeneMark_model.108975_t, internal, 729, 833
-recovered GeneMark_model.108975_t, internal, 865, 1078

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3117
-exon list size: 23


building trellis

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36.0    
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48.0    
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64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
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92.0    
96.0    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support