-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1155

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 59, 91
Couldn't classify 3064, 3084
Sorry, prediction GeneMark_model.108973_t fails validation.
(AGA)	 AG	59-91	GT	GAG
(GGA)	 AG	1233-1265	GT	ATG
(CAA)	 AG	1571-1594	GT	ATG
(CAA)	 AG	1949-1963	GT	ATG
(AGA)	 AG	2161-2181	GT	ATG
(AGA)	 AG	2268-2309	GT	GAG
(ACA)	 AG	2414-2452	GT	CAG
(TGT)	 AG	2500-2514	GT	AAG
(GCT)	 AG	3036-3041	GT	GGG
(GAG)	 AG	3064-3084	GT	GTG
-recovered GeneMark_model.108973_t, internal, 59, 91
-recovered GeneMark_model.108973_t, internal, 1233, 1265
-recovered GeneMark_model.108973_t, internal, 1571, 1594
-recovered GeneMark_model.108973_t, internal, 1949, 1963
-recovered GeneMark_model.108973_t, internal, 2161, 2181
-recovered GeneMark_model.108973_t, internal, 2268, 2309
-recovered GeneMark_model.108973_t, internal, 2414, 2452
-recovered GeneMark_model.108973_t, internal, 2500, 2514
-recovered GeneMark_model.108973_t, internal, 3036, 3041
-recovered GeneMark_model.108973_t, internal, 3064, 3084

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62504-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3117
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support