-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1154

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2604, 2716
Sorry, prediction snap_scaffold_1154-snap.1-T1 fails validation.
(ATG)	 TG	798-803	GT	AGG
(ATC)	 AG	2473-2583	GT	AGG
(GTC)	 AG	2604-2716	GT	AAG
-recovered snap_scaffold_1154-snap.1-T1, initial, 798, 803
-recovered snap_scaffold_1154-snap.1-T1, internal, 2473, 2583
-recovered snap_scaffold_1154-snap.1-T1, internal, 2604, 2716
Couldn't classify 36, 152
Couldn't classify 2743, 2772
Sorry, prediction GeneMark_model.108972_t fails validation.
(AGG)	 AG	36-152	GT	GAG
(GGA)	 AG	199-315	GT	CAG
(AGG)	 AG	398-571	GT	TGG
(GGA)	 AG	852-857	GC	AGG
(GGA)	 AG	882-887	GT	AGG
(GTG)	 AG	2503-2514	GT	TCG
(GAC)	 AG	2538-2583	GT	AGG
(GTC)	 AG	2604-2716	GT	AAG
(AAC)	 AG	2743-2772	GT	CGG
-recovered GeneMark_model.108972_t, internal, 36, 152
-recovered GeneMark_model.108972_t, internal, 199, 315
-recovered GeneMark_model.108972_t, internal, 398, 571
-recovered GeneMark_model.108972_t, internal, 852, 857
-recovered GeneMark_model.108972_t, internal, 882, 887
-recovered GeneMark_model.108972_t, internal, 2503, 2514
-recovered GeneMark_model.108972_t, internal, 2538, 2583
-recovered GeneMark_model.108972_t, internal, 2604, 2716
-recovered GeneMark_model.108972_t, internal, 2743, 2772
Valid prediction for GlimmerHMM_glimmerT_62503-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62502-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3121
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support