-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1153

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62501-T1
Valid prediction for Augustus_model.g41556.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3006, 3111
Sorry, prediction Augustus_model.g41555.t1 fails validation.
(ATG)	 AG	2265-2306	GT	GGG
(GGG)	 AG	3006-3111	GT	AGG
-recovered Augustus_model.g41555.t1, initial, 2265, 2306
-recovered Augustus_model.g41555.t1, internal, 2265, 2306
-recovered Augustus_model.g41555.t1, internal, 3006, 3111
Couldn't classify 1209, 1331
Couldn't classify 3006, 3096
Sorry, prediction GeneMark_model.108971_t fails validation.
(GGG)	 AG	1209-1331	GT	CTG
(AAA)	 AG	1479-1566	GT	AGG
(GGG)	 AG	3006-3096	GT	AAG
-recovered GeneMark_model.108971_t, internal, 1209, 1331
-recovered GeneMark_model.108971_t, internal, 1479, 1566
-recovered GeneMark_model.108971_t, internal, 3006, 3096
Couldn't classify 3006, 3111
Sorry, prediction snap_scaffold_1153-snap.1-T1 fails validation.
(ATG)	 CC	1159-1410	GT	TGG
(GGG)	 AG	3006-3111	GT	AGG
-recovered snap_scaffold_1153-snap.1-T1, initial, 1159, 1410
-recovered snap_scaffold_1153-snap.1-T1, internal, 3006, 3111

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3122
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support