-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1151

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1151-snap.1-T1
Couldn't classify 1129, 1134
Couldn't classify 3043, 3091
Sorry, prediction GeneMark_model.108970_t fails validation.
(AGG)	 AG	1129-1134	GT	GGG
(AAG)	 AG	1162-1167	GT	AGG
(AGG)	 AG	1191-1238	GT	GGG
(GAA)	 AG	1265-1282	GT	AAG
(ACT)	 AG	1398-1451	GT	GCG
(ACA)	 AG	2238-2392	GT	GAG
(AGA)	 AG	2421-2466	GT	GAG
(AGA)	 AG	2530-2607	GT	GAG
(ACA)	 AG	2630-2638	GT	GAG
(GGA)	 AG	2665-2730	GT	GAG
(ACC)	 AG	2755-2763	GT	GAG
(AGA)	 AG	2817-2849	GT	GAG
(AGA)	 AG	2947-2961	GT	GAG
(GCT)	 AG	3043-3091	GT	GGG
-recovered GeneMark_model.108970_t, terminal, 2947, 2961
-recovered GeneMark_model.108970_t, internal, 1129, 1134
-recovered GeneMark_model.108970_t, internal, 1162, 1167
-recovered GeneMark_model.108970_t, internal, 1191, 1238
-recovered GeneMark_model.108970_t, internal, 1265, 1282
-recovered GeneMark_model.108970_t, internal, 1398, 1451
-recovered GeneMark_model.108970_t, internal, 2238, 2392
-recovered GeneMark_model.108970_t, internal, 2421, 2466
-recovered GeneMark_model.108970_t, internal, 2530, 2607
-recovered GeneMark_model.108970_t, internal, 2630, 2638
-recovered GeneMark_model.108970_t, internal, 2665, 2730
-recovered GeneMark_model.108970_t, internal, 2755, 2763
-recovered GeneMark_model.108970_t, internal, 2817, 2849
-recovered GeneMark_model.108970_t, internal, 2947, 2961
-recovered GeneMark_model.108970_t, internal, 3043, 3091

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3122
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support