-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1150

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 165, 222
Couldn't classify 2565, 2756
Sorry, prediction GeneMark_model.108969_t fails validation.
(GCC)	 AG	165-222	GT	ATG
(GAG)	 AG	1141-1281	GT	CTG
(AGG)	 AG	1514-1525	GT	AAG
(GAG)	 AG	1549-1569	GT	GAG
(GGG)	 AG	1611-1706	GT	GAG
(AGG)	 AG	1730-1780	GT	GCG
(GGG)	 AG	1805-1852	GT	GCG
(GGG)	 AG	1877-2033	GT	ATG
(AGC)	 AG	2565-2756	GT	GGG
-recovered GeneMark_model.108969_t, internal, 165, 222
-recovered GeneMark_model.108969_t, internal, 1141, 1281
-recovered GeneMark_model.108969_t, internal, 1514, 1525
-recovered GeneMark_model.108969_t, internal, 1549, 1569
-recovered GeneMark_model.108969_t, internal, 1611, 1706
-recovered GeneMark_model.108969_t, internal, 1730, 1780
-recovered GeneMark_model.108969_t, internal, 1805, 1852
-recovered GeneMark_model.108969_t, internal, 1877, 2033
-recovered GeneMark_model.108969_t, internal, 2565, 2756
Valid prediction for Augustus_model.g41554.t1
add_exon() Sorry, Augustus_model.g41554.t1 165-226-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62500-T1
Couldn't classify 165, 222
Couldn't classify 2960, 3063
Sorry, prediction snap_scaffold_1150-snap.1-T1 fails validation.
(GCC)	 AG	165-222	GT	ATG
(GAG)	 AG	1121-1259	GT	CAG
(AGC)	 AG	2565-2756	GT	GGG
(AAC)	 AG	2832-2901	GT	AGG
(CTC)	 AG	2960-3063	GT	TCG
-recovered snap_scaffold_1150-snap.1-T1, internal, 165, 222
-recovered snap_scaffold_1150-snap.1-T1, internal, 1121, 1259
-recovered snap_scaffold_1150-snap.1-T1, internal, 2565, 2756
-recovered snap_scaffold_1150-snap.1-T1, internal, 2832, 2901
-recovered snap_scaffold_1150-snap.1-T1, internal, 2960, 3063

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3123
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support