-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1149

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 150, 242
Sorry, prediction snap_scaffold_1149-snap.1-T1 fails validation.
(CTC)	 AG	150-242	GT	AGG
(GGC)	 AG	668-893	GT	CAG
(AAA)	 AG	2874-3035	CA	GAC
-recovered snap_scaffold_1149-snap.1-T1, terminal, 2874, 3035
-recovered snap_scaffold_1149-snap.1-T1, internal, 150, 242
-recovered snap_scaffold_1149-snap.1-T1, internal, 668, 893
Valid prediction for GeneMark_model.108967_t
Couldn't classify 150, 242
Sorry, prediction Augustus_model.g41553.t1 fails validation.
(CTC)	 AG	150-242	GT	AGG
(GGC)	 AG	668-883	GT	TGG
(ATC)	 AG	1210-1301	GT	CTG
(GTT)	 AG	2420-2448	GG	GAG
-recovered Augustus_model.g41553.t1, terminal, 2420, 2448
-recovered Augustus_model.g41553.t1, internal, 150, 242
-recovered Augustus_model.g41553.t1, internal, 668, 883
-recovered Augustus_model.g41553.t1, internal, 1210, 1301

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 44, 52
Sorry, prediction GeneMark_model.108968_t fails validation.
(AGG)	 AG	44-52	GT	GAG
(GGT)	 AG	641-730	GT	TGG
(GAC)	 AG	763-780	GT	GAG
(AGG)	 AG	808-816	GT	GAG
(ATA)	 AG	986-989	GC	AGG
-recovered GeneMark_model.108968_t, terminal, 44, 52
-recovered GeneMark_model.108968_t, terminal, 763, 780
-recovered GeneMark_model.108968_t, terminal, 986, 989
-recovered GeneMark_model.108968_t, internal, 44, 52
-recovered GeneMark_model.108968_t, internal, 641, 730
-recovered GeneMark_model.108968_t, internal, 763, 780
-recovered GeneMark_model.108968_t, internal, 808, 816
-recovered GeneMark_model.108968_t, internal, 986, 989
Couldn't classify 3049, 3108
Sorry, prediction GeneMark_model.108966_t fails validation.
(ATG)	 CT	2001-2017	GT	ACG
(GAA)	 AG	2122-2136	GT	AAG
(AGA)	 AG	2164-2196	GT	GTG
(AGA)	 AG	2220-2375	GT	CTG
(ACA)	 AG	2412-2491	GT	GCG
(CAG)	 AG	2853-3021	GT	GGG
(TGA)	 AG	3049-3108	GT	GCG
-recovered GeneMark_model.108966_t, initial, 2001, 2017
-recovered GeneMark_model.108966_t, internal, 2122, 2136
-recovered GeneMark_model.108966_t, internal, 2164, 2196
-recovered GeneMark_model.108966_t, internal, 2220, 2375
-recovered GeneMark_model.108966_t, internal, 2412, 2491
-recovered GeneMark_model.108966_t, internal, 2853, 3021
-recovered GeneMark_model.108966_t, internal, 3049, 3108
Couldn't classify 892, 913
Sorry, prediction snap_scaffold_1149-snap.2-T1 fails validation.
(ATT)	 AG	892-913	GT	TGG
(AGA)	 AG	2342-2560	AA	GAA
-recovered snap_scaffold_1149-snap.2-T1, terminal, 2342, 2560
-recovered snap_scaffold_1149-snap.2-T1, internal, 892, 913

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3035, rend_intergenic: 565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3124
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3035, rend_intergenic: 565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support