-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1148

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 425, 475
Sorry, prediction GeneMark_model.108965_t fails validation.
(AGA)	 AG	425-475	GC	GGG
(GGG)	 AG	497-568	GT	ATG
(ACA)	 AG	596-660	GT	CAG
(GGA)	 AG	687-754	AA	GAA
-recovered GeneMark_model.108965_t, terminal, 687, 754
-recovered GeneMark_model.108965_t, internal, 425, 475
-recovered GeneMark_model.108965_t, internal, 497, 568
-recovered GeneMark_model.108965_t, internal, 596, 660

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41552.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3128
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support