-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1146

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 51, 83
Sorry, prediction GeneMark_model.108961_t fails validation.
(AGA)	 AG	51-83	GT	GAG
(AAA)	 AG	118-126	GT	GAG
(AAA)	 AG	153-179	GT	GAG
(AGA)	 AG	203-376	GT	GAG
(GGA)	 AG	399-495	TG	AGT
-recovered GeneMark_model.108961_t, terminal, 399, 495
-recovered GeneMark_model.108961_t, internal, 51, 83
-recovered GeneMark_model.108961_t, internal, 118, 126
-recovered GeneMark_model.108961_t, internal, 153, 179
-recovered GeneMark_model.108961_t, internal, 203, 376

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108962_t
Couldn't classify 1482, 1554
Couldn't classify 1839, 2300
Sorry, prediction snap_scaffold_1146-snap.1-T1 fails validation.
(AAA)	 AG	1482-1554	GT	ACG
(AAG)	 AG	1839-2300	GT	ATG
-recovered snap_scaffold_1146-snap.1-T1, internal, 1482, 1554
-recovered snap_scaffold_1146-snap.1-T1, internal, 1839, 2300

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3136
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support