-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1145

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 595, 696
Couldn't classify 2397, 2518
Sorry, prediction snap_scaffold_1145-snap.1-T1 fails validation.
(GGT)	 AG	595-696	GT	AAG
(AGC)	 AG	2397-2518	GT	AGG
-recovered snap_scaffold_1145-snap.1-T1, internal, 595, 696
-recovered snap_scaffold_1145-snap.1-T1, internal, 2397, 2518

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 614, 729
Couldn't classify 2428, 2484
Sorry, prediction snap_scaffold_1145-snap.2-T1 fails validation.
(AGA)	 AG	614-729	GT	GGG
(CGT)	 AG	2084-2286	GT	AGG
(TAT)	 AG	2428-2484	GT	AGG
-recovered snap_scaffold_1145-snap.2-T1, internal, 614, 729
-recovered snap_scaffold_1145-snap.2-T1, internal, 2084, 2286
-recovered snap_scaffold_1145-snap.2-T1, internal, 2428, 2484
Couldn't classify 614, 718
Sorry, prediction GeneMark_model.108960_t fails validation.
(AGA)	 AG	614-718	GT	TGG
(CGT)	 AG	2084-2143	GT	GAG
(GGT)	 AG	2170-2182	AA	GAA
-recovered GeneMark_model.108960_t, terminal, 2170, 2182
-recovered GeneMark_model.108960_t, internal, 614, 718
-recovered GeneMark_model.108960_t, internal, 2084, 2143

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2518, rend_intergenic: 665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3148
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2518, rend_intergenic: 665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support