-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1144

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108959_t
Couldn't classify 166, 228
Couldn't classify 2716, 2893
Sorry, prediction snap_scaffold_1144-snap.1-T1 fails validation.
(GTG)	 AG	166-228	GT	AGG
(GTG)	 AG	993-1117	GT	GTG
(GGT)	 AG	2716-2893	GT	GGG
-recovered snap_scaffold_1144-snap.1-T1, internal, 166, 228
-recovered snap_scaffold_1144-snap.1-T1, internal, 993, 1117
-recovered snap_scaffold_1144-snap.1-T1, internal, 2716, 2893
Couldn't classify 166, 248
Sorry, prediction GeneMark_model.108957_t fails validation.
(GTG)	 AG	166-248	GT	CAG
(GAG)	 AG	885-899	GT	GGG
(GAT)	 AG	926-971	AG	GAA
-recovered GeneMark_model.108957_t, terminal, 926, 971
-recovered GeneMark_model.108957_t, internal, 166, 248
-recovered GeneMark_model.108957_t, internal, 885, 899

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62498-T1
Valid prediction for GeneMark_model.108958_t
Valid prediction for Augustus_model.g41550.t1
Couldn't classify 1977, 2105
Sorry, prediction snap_scaffold_1144-snap.2-T1 fails validation.
(ATG)	 AG	240-534	GT	GGG
(GTC)	 AG	1977-2105	GT	GTG
-recovered snap_scaffold_1144-snap.2-T1, initial, 240, 534
-recovered snap_scaffold_1144-snap.2-T1, internal, 240, 534
-recovered snap_scaffold_1144-snap.2-T1, internal, 1977, 2105

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2893, rend_intergenic: 1049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3153
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2893, rend_intergenic: 1049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support