-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1142

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62495-T1
Couldn't classify 2484, 2811
Sorry, prediction GeneMark_model.108955_t fails validation.
(ATG)	 CC	533-999	GT	CAG
(GAG)	 AG	2402-2413	GT	AGG
(GAA)	 AG	2453-2461	GT	GCG
(GGA)	 AG	2484-2811	GT	AGG
-recovered GeneMark_model.108955_t, initial, 533, 999
-recovered GeneMark_model.108955_t, internal, 2402, 2413
-recovered GeneMark_model.108955_t, internal, 2453, 2461
-recovered GeneMark_model.108955_t, internal, 2484, 2811
Couldn't classify 463, 999
Couldn't classify 2449, 2811
Sorry, prediction snap_scaffold_1142-snap.1-T1 fails validation.
(CTA)	 AG	463-999	GT	CAG
(AGC)	 AG	2266-2413	GT	AGG
(AAA)	 AG	2449-2811	GT	AGG
-recovered snap_scaffold_1142-snap.1-T1, internal, 463, 999
-recovered snap_scaffold_1142-snap.1-T1, internal, 2266, 2413
-recovered snap_scaffold_1142-snap.1-T1, internal, 2449, 2811
Valid prediction for GlimmerHMM_glimmerT_62496-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3154
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support