-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1141

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2959, 3079
Sorry, prediction GeneMark_model.108954_t fails validation.
(ATG)	 AG	2725-2741	GT	CTG
(ATG)	 AG	2767-2799	GT	GAG
(ACA)	 AG	2839-2859	GT	GAG
(AGA)	 AG	2883-2933	GT	GAG
(ACA)	 AG	2959-3079	GT	GAG
-recovered GeneMark_model.108954_t, initial, 2725, 2741
add_exon() Sorry, GeneMark_model.108954_t 2767-2799-initial-1 is invalid.
-recovered GeneMark_model.108954_t, initial, 2767, 2799
-recovered GeneMark_model.108954_t, internal, 2725, 2741
-recovered GeneMark_model.108954_t, internal, 2767, 2799
-recovered GeneMark_model.108954_t, internal, 2839, 2859
-recovered GeneMark_model.108954_t, internal, 2883, 2933
-recovered GeneMark_model.108954_t, internal, 2959, 3079

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2483, 2497
Sorry, prediction GeneMark_model.108953_t fails validation.
(ATG)	 TC	2044-2072	GT	GGG
(ACA)	 AG	2119-2130	GT	AGG
(GGA)	 AG	2151-2171	GT	GAG
(AGG)	 AG	2207-2218	GT	AGG
(AGA)	 AG	2243-2248	GT	AGG
(ACA)	 AG	2271-2282	GT	AGG
(AGG)	 AG	2307-2318	GT	AGG
(AGA)	 AG	2341-2355	GT	GAG
(AGA)	 AG	2379-2393	GT	GAG
(AGA)	 AG	2425-2448	GT	AGG
(AAG)	 AG	2483-2497	GT	AAG
-recovered GeneMark_model.108953_t, initial, 2044, 2072
-recovered GeneMark_model.108953_t, internal, 2119, 2130
-recovered GeneMark_model.108953_t, internal, 2151, 2171
-recovered GeneMark_model.108953_t, internal, 2207, 2218
-recovered GeneMark_model.108953_t, internal, 2243, 2248
-recovered GeneMark_model.108953_t, internal, 2271, 2282
-recovered GeneMark_model.108953_t, internal, 2307, 2318
-recovered GeneMark_model.108953_t, internal, 2341, 2355
-recovered GeneMark_model.108953_t, internal, 2379, 2393
-recovered GeneMark_model.108953_t, internal, 2425, 2448
-recovered GeneMark_model.108953_t, internal, 2483, 2497

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3160
-exon list size: 39


building trellis

2.4    
4.9    
7.3    
9.8    
12.2    
14.6    
17.1    
19.5    
22.0    
24.4    
26.8    
29.3    
31.7    
34.1    
36.6    
39.0    
41.5    
43.9    
46.3    
48.8    
51.2    
53.7    
56.1    
58.5    
61.0    
63.4    
65.9    
68.3    
70.7    
73.2    
75.6    
78.0    
80.5    
82.9    
85.4    
87.8    
90.2    
92.7    
95.1    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support