-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_114

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1625, 1784
Couldn't classify 2829, 3013
Sorry, prediction pasa_asmbl_7378.p1 fails validation.
(ACA)	 CG	1625-1784	GT	AGG
(GCG)	 AG	2143-2244	GT	CTG
(ATC)	 AG	2829-3013	AG	CCA
-recovered pasa_asmbl_7378.p1, internal, 2143, 2244
Valid prediction for snap_scaffold_114-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_61316-T1
Valid prediction for GlimmerHMM_glimmerT_61317-T1
Valid prediction for CodingQuarry_transcript_8354-T1
Valid prediction for snap_scaffold_114-snap.2-T1
Couldn't classify 14105, 14110
Sorry, prediction GeneMark_model.106610_t fails validation.
(ATG)	 AC	12026-12176	GT	AGG
(GCG)	 AG	12561-12666	GT	GAG
(AGG)	 AG	14030-14083	GT	GAG
(ACA)	 AG	14105-14110	GT	AGG
-recovered GeneMark_model.106610_t, initial, 12026, 12176
-recovered GeneMark_model.106610_t, terminal, 12561, 12666
-recovered GeneMark_model.106610_t, internal, 12561, 12666
-recovered GeneMark_model.106610_t, internal, 14030, 14083
-recovered GeneMark_model.106610_t, internal, 14105, 14110
Valid prediction for Augustus_model.g40787.t1
Valid prediction for pasa_asmbl_7380.p2
Valid prediction for GlimmerHMM_glimmerT_61313-T1
Valid prediction for CodingQuarry_transcript_8353-T1
Valid prediction for snap_scaffold_114-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_61315-T1
Valid prediction for Augustus_model.g40788.t1
Valid prediction for GeneMark_model.106609_t
Valid prediction for GeneMark_model.106608_t
Valid prediction for snap_scaffold_114-snap.5-T1
Valid prediction for GlimmerHMM_glimmerT_61314-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_114-snap.4-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 14875
-exon list size: 61


building trellis

1.6    
3.2    
4.8    
6.3    
7.9    
9.5    
11.1    
12.7    
14.3    
15.9    
17.5    
19.0    
20.6    
22.2    
23.8    
25.4    
27.0    
28.6    
30.2    
31.7    
33.3    
34.9    
36.5    
38.1    
39.7    
41.3    
42.9    
44.4    
46.0    
47.6    
49.2    
50.8    
52.4    
54.0    
55.6    
57.1    
58.7    
60.3    
61.9    
63.5    
65.1    
66.7    
68.3    
69.8    
71.4    
73.0    
74.6    
76.2    
77.8    
79.4    
81.0    
82.5    
84.1    
85.7    
87.3    
88.9    
90.5    
92.1    
93.7    
95.2    
96.8    
98.4    
-found 5 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support