-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1139

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108952_t
add_exon() Sorry, GeneMark_model.108952_t 44-221-terminal-1 is invalid.
Couldn't classify 2805, 2837
Sorry, prediction snap_scaffold_1139-snap.1-T1 fails validation.
(ATG)	 AG	79-239	GT	CAG
(CAG)	 AG	2613-2682	GT	TGG
(GTC)	 AG	2805-2837	GT	TGG
-recovered snap_scaffold_1139-snap.1-T1, initial, 79, 239
-recovered snap_scaffold_1139-snap.1-T1, internal, 79, 239
-recovered snap_scaffold_1139-snap.1-T1, internal, 2613, 2682
-recovered snap_scaffold_1139-snap.1-T1, internal, 2805, 2837
Valid prediction for GlimmerHMM_glimmerT_62494-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3166
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support