-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1138

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 478, 646
Sorry, prediction GeneMark_model.108950_t fails validation.
(GCT)	 AG	478-646	GT	AGG
(TGT)	 AG	696-701	AC	AGA
-recovered GeneMark_model.108950_t, terminal, 696, 701
-recovered GeneMark_model.108950_t, internal, 478, 646
Couldn't classify 3054, 3138
Sorry, prediction GeneMark_model.108951_t fails validation.
(ATG)	 AG	2393-2418	GT	GTG
(GGG)	 AG	2468-2521	GT	CAG
(AGA)	 AG	2545-2553	GT	GAG
(GGA)	 AG	2587-2601	GT	GAG
(TAG)	 AG	2633-2737	GT	GAG
(ACA)	 AG	2760-2768	GT	GAG
(ACT)	 AG	2814-2834	GT	GAG
(ACA)	 AG	2856-2864	GT	GAG
(AGT)	 AG	2894-2953	GT	GAG
(TAG)	 AG	2978-2995	GT	GAG
(TAG)	 AG	3016-3033	GT	GAG
(TAG)	 AG	3054-3138	GT	ACG
-recovered GeneMark_model.108951_t, initial, 2393, 2418
-recovered GeneMark_model.108951_t, internal, 2393, 2418
-recovered GeneMark_model.108951_t, internal, 2468, 2521
-recovered GeneMark_model.108951_t, internal, 2545, 2553
-recovered GeneMark_model.108951_t, internal, 2587, 2601
-recovered GeneMark_model.108951_t, internal, 2633, 2737
-recovered GeneMark_model.108951_t, internal, 2760, 2768
-recovered GeneMark_model.108951_t, internal, 2814, 2834
-recovered GeneMark_model.108951_t, internal, 2856, 2864
-recovered GeneMark_model.108951_t, internal, 2894, 2953
-recovered GeneMark_model.108951_t, internal, 2978, 2995
-recovered GeneMark_model.108951_t, internal, 3016, 3033
-recovered GeneMark_model.108951_t, internal, 3054, 3138
Valid prediction for GlimmerHMM_glimmerT_62493-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62493-T1 478-715-terminal-1 is invalid.
Valid prediction for Augustus_model.g41548.t1
add_exon() Sorry, Augustus_model.g41548.t1 478-715-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3166
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support