-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1135

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108947_t
Couldn't classify 23, 41
Sorry, prediction GeneMark_model.108946_t fails validation.
(AGC)	 AG	23-41	GT	AGG
(CAG)	 AG	74-175	GT	GGG
(GCG)	 AG	234-319	GC	CCG
(GGG)	 AG	343-484	GT	TTG
(GCT)	 AG	511-649	GG	AGG
-recovered GeneMark_model.108946_t, terminal, 511, 649
-recovered GeneMark_model.108946_t, internal, 23, 41
-recovered GeneMark_model.108946_t, internal, 74, 175
-recovered GeneMark_model.108946_t, internal, 234, 319
-recovered GeneMark_model.108946_t, internal, 343, 484
Couldn't classify 126, 175
Sorry, prediction snap_scaffold_1135-snap.1-T1 fails validation.
(CGT)	 AG	126-175	GT	GGG
(GTC)	 AG	272-644	GT	GGG
(GGC)	 AG	3018-3107	TG	GAT
-recovered snap_scaffold_1135-snap.1-T1, terminal, 3018, 3107
-recovered snap_scaffold_1135-snap.1-T1, internal, 126, 175
-recovered snap_scaffold_1135-snap.1-T1, internal, 272, 644

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62492-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62492-T1 2811-3039-terminal-1 is invalid.
Valid prediction for Augustus_model.g41546.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3180
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support