-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1134

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 656, 703
Sorry, prediction GeneMark_model.108945_t fails validation.
(AGA)	 AG	656-703	GT	GAG
(AAA)	 AG	731-775	GT	GAG
(AGT)	 AG	801-866	GT	AGG
(AGA)	 AG	891-896	GT	AGG
(TGA)	 AG	935-953	AA	GAA
-recovered GeneMark_model.108945_t, terminal, 935, 953
-recovered GeneMark_model.108945_t, internal, 656, 703
-recovered GeneMark_model.108945_t, internal, 731, 775
-recovered GeneMark_model.108945_t, internal, 801, 866
-recovered GeneMark_model.108945_t, internal, 891, 896

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3181
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support