-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1131

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 800, 931
Couldn't classify 2861, 3181
Sorry, prediction GeneMark_model.108941_t fails validation.
(ACT)	 AG	800-931	GT	AAG
(AGA)	 AG	2372-2404	GT	GAG
(GGA)	 AG	2430-2474	GT	GAG
(ATA)	 AG	2510-2518	GT	GAG
(GGA)	 AG	2574-2699	GT	GAG
(GTG)	 AG	2861-3181	GC	GGG
-recovered GeneMark_model.108941_t, internal, 800, 931
-recovered GeneMark_model.108941_t, internal, 2372, 2404
-recovered GeneMark_model.108941_t, internal, 2430, 2474
-recovered GeneMark_model.108941_t, internal, 2510, 2518
-recovered GeneMark_model.108941_t, internal, 2574, 2699
-recovered GeneMark_model.108941_t, internal, 2861, 3181
Couldn't classify 2839, 3176
Sorry, prediction snap_scaffold_1131-snap.1-T1 fails validation.
(ATG)	 AG	742-931	GT	AAG
(TAG)	 AG	2839-3176	GT	GGG
-recovered snap_scaffold_1131-snap.1-T1, initial, 742, 931
-recovered snap_scaffold_1131-snap.1-T1, internal, 742, 931
-recovered snap_scaffold_1131-snap.1-T1, internal, 2839, 3176
Couldn't classify 2839, 3039
Sorry, prediction GlimmerHMM_glimmerT_62489-T1 fails validation.
(ATG)	 TC	300-312	GT	TGG
(TAG)	 AG	2839-3039	GT	GCG
-recovered GlimmerHMM_glimmerT_62489-T1, initial, 300, 312
-recovered GlimmerHMM_glimmerT_62489-T1, internal, 2839, 3039

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3198
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support