-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1130

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2063, 2163
Sorry, prediction snap_scaffold_1130-snap.1-T1 fails validation.
(GAA)	 AG	2063-2163	GT	GGG
(GAG)	 AG	2206-2327	GT	AGG
(AAA)	 AG	2930-3042	AG	AGA
-recovered snap_scaffold_1130-snap.1-T1, terminal, 2930, 3042
-recovered snap_scaffold_1130-snap.1-T1, internal, 2063, 2163
-recovered snap_scaffold_1130-snap.1-T1, internal, 2206, 2327
Couldn't classify 3158, 3185
Sorry, prediction GeneMark_model.108940_t fails validation.
(ATG)	 GA	973-1001	GT	GAG
(CAG)	 AG	1044-1142	GT	GGG
(GGG)	 AG	1205-1339	GT	GTG
(GAA)	 AG	1362-1371	GT	AGG
(GAA)	 AG	2063-2148	GT	GAG
(AAA)	 AG	2176-2187	GT	GGG
(CTC)	 AG	2211-2288	GT	AGG
(GGG)	 AG	2316-2327	GT	AGG
(AGA)	 AG	2352-2420	GC	GGG
(GAC)	 AG	2441-2447	GT	ACG
(GGA)	 AG	2546-2562	GT	GTG
(AAG)	 AG	2596-2619	GT	GAG
(AAA)	 AG	2641-2658	GT	ATG
(AGA)	 AG	2685-2693	GT	AGG
(AAA)	 AG	2974-2991	GT	AGG
(GTG)	 AG	3018-3038	GT	AGG
(GGA)	 AG	3060-3095	GT	AGG
(GAG)	 AG	3127-3132	GT	GGG
(GAG)	 AG	3158-3185	GT	AGG
-recovered GeneMark_model.108940_t, initial, 973, 1001
-recovered GeneMark_model.108940_t, internal, 1044, 1142
-recovered GeneMark_model.108940_t, internal, 1205, 1339
-recovered GeneMark_model.108940_t, internal, 1362, 1371
-recovered GeneMark_model.108940_t, internal, 2063, 2148
-recovered GeneMark_model.108940_t, internal, 2176, 2187
-recovered GeneMark_model.108940_t, internal, 2211, 2288
-recovered GeneMark_model.108940_t, internal, 2316, 2327
-recovered GeneMark_model.108940_t, internal, 2352, 2420
-recovered GeneMark_model.108940_t, internal, 2441, 2447
-recovered GeneMark_model.108940_t, internal, 2546, 2562
-recovered GeneMark_model.108940_t, internal, 2596, 2619
-recovered GeneMark_model.108940_t, internal, 2641, 2658
-recovered GeneMark_model.108940_t, internal, 2685, 2693
-recovered GeneMark_model.108940_t, internal, 2974, 2991
-recovered GeneMark_model.108940_t, internal, 3018, 3038
-recovered GeneMark_model.108940_t, internal, 3060, 3095
-recovered GeneMark_model.108940_t, internal, 3127, 3132
-recovered GeneMark_model.108940_t, internal, 3158, 3185

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2992, 3189
Sorry, prediction GeneMark_model.108939_t fails validation.
(ATG)	 GG	2918-2940	GT	GAG
(AGA)	 AG	2992-3189	GT	AGG
-recovered GeneMark_model.108939_t, initial, 2918, 2940
-recovered GeneMark_model.108939_t, internal, 2992, 3189

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3200
-exon list size: 58


building trellis

1.7    
3.3    
5.0    
6.7    
8.3    
10.0    
11.7    
13.3    
15.0    
16.7    
18.3    
20.0    
21.7    
23.3    
25.0    
26.7    
28.3    
30.0    
31.7    
33.3    
35.0    
36.7    
38.3    
40.0    
41.7    
43.3    
45.0    
46.7    
48.3    
50.0    
51.7    
53.3    
55.0    
56.7    
58.3    
60.0    
61.7    
63.3    
65.0    
66.7    
68.3    
70.0    
71.7    
73.3    
75.0    
76.7    
78.3    
80.0    
81.7    
83.3    
85.0    
86.7    
88.3    
90.0    
91.7    
93.3    
95.0    
96.7    
98.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support