-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1129

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 616, 808
Sorry, prediction snap_scaffold_1129-snap.1-T1 fails validation.
(ATT)	 AG	616-808	GT	ACG
(GAC)	 AG	838-893	AG	AAA
-recovered snap_scaffold_1129-snap.1-T1, terminal, 838, 893
-recovered snap_scaffold_1129-snap.1-T1, internal, 616, 808

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1405, 1593
Sorry, prediction GlimmerHMM_glimmerT_62488-T1 fails validation.
(TCA)	 AG	1405-1593	GT	GGG
(CTC)	 AG	2335-2552	TT	GAT
-recovered GlimmerHMM_glimmerT_62488-T1, terminal, 2335, 2552
-recovered GlimmerHMM_glimmerT_62488-T1, internal, 1405, 1593
Valid prediction for snap_scaffold_1129-snap.2-T1
Valid prediction for Augustus_model.g41544.t1
Couldn't classify 49, 108
Couldn't classify 2424, 2548
Sorry, prediction GeneMark_model.108938_t fails validation.
(GTT)	 AG	49-108	GT	GGG
(AAA)	 AG	134-149	GT	AAG
(ACC)	 AG	1061-1142	GT	TGG
(TCA)	 AG	1405-1580	GT	GAG
(GAG)	 AG	2424-2548	GT	CGG
-recovered GeneMark_model.108938_t, internal, 49, 108
-recovered GeneMark_model.108938_t, internal, 134, 149
-recovered GeneMark_model.108938_t, internal, 1061, 1142
-recovered GeneMark_model.108938_t, internal, 1405, 1580
-recovered GeneMark_model.108938_t, internal, 2424, 2548

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3200
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support