-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1128

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 837, 989
Couldn't classify 2047, 2404
Sorry, prediction snap_scaffold_1128-snap.2-T1 fails validation.
(ATC)	 AG	837-989	GT	GGG
(CAC)	 AG	2047-2404	GT	CAG
-recovered snap_scaffold_1128-snap.2-T1, internal, 837, 989
-recovered snap_scaffold_1128-snap.2-T1, internal, 2047, 2404
Valid prediction for GeneMark_model.108936_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 67, 245
Sorry, prediction GeneMark_model.108937_t fails validation.
(GAG)	 AG	67-245	GT	AGG
(GTC)	 AG	877-1177	GA	AAG
-recovered GeneMark_model.108937_t, terminal, 877, 1177
-recovered GeneMark_model.108937_t, internal, 67, 245
Valid prediction for GeneMark_model.108935_t
Couldn't classify 67, 245
Sorry, prediction GlimmerHMM_glimmerT_62487-T1 fails validation.
(GAG)	 AG	67-245	GT	AGG
(GTC)	 AG	877-1173	GT	GGG
(CCA)	 AG	1995-2395	GT	AGG
(GCA)	 AG	2729-2886	GG	GAG
-recovered GlimmerHMM_glimmerT_62487-T1, terminal, 2729, 2886
-recovered GlimmerHMM_glimmerT_62487-T1, internal, 67, 245
-recovered GlimmerHMM_glimmerT_62487-T1, internal, 877, 1173
-recovered GlimmerHMM_glimmerT_62487-T1, internal, 1995, 2395
Couldn't classify 67, 245
Sorry, prediction snap_scaffold_1128-snap.1-T1 fails validation.
(GAG)	 AG	67-245	GT	AGG
(GTC)	 AG	877-1173	GT	GGG
(CCA)	 AG	1995-2395	GT	AGG
(GCA)	 AG	2729-2886	GG	GAG
-recovered snap_scaffold_1128-snap.1-T1, terminal, 2729, 2886
-recovered snap_scaffold_1128-snap.1-T1, internal, 67, 245
-recovered snap_scaffold_1128-snap.1-T1, internal, 877, 1173
-recovered snap_scaffold_1128-snap.1-T1, internal, 1995, 2395
Couldn't classify 67, 245
Sorry, prediction Augustus_model.g41543.t1 fails validation.
(GAG)	 AG	67-245	GT	AGG
(GTC)	 AG	877-1173	GT	GGG
(CCA)	 AG	1995-2087	GT	ACG
(GAA)	 AG	2328-2395	GT	AGG
(GCA)	 AG	2729-2886	GG	GAG
-recovered Augustus_model.g41543.t1, terminal, 2729, 2886
-recovered Augustus_model.g41543.t1, internal, 67, 245
-recovered Augustus_model.g41543.t1, internal, 877, 1173
-recovered Augustus_model.g41543.t1, internal, 1995, 2087
-recovered Augustus_model.g41543.t1, internal, 2328, 2395

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3143, rend_intergenic: 837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3209
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3143, rend_intergenic: 837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support