-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1127

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1127-snap.1-T1
Valid prediction for GeneMark_model.108933_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 48, 117
Sorry, prediction GeneMark_model.108934_t fails validation.
(GTC)	 AG	48-117	GT	GCG
(AGA)	 AG	737-769	GT	GGG
(AGA)	 AG	801-827	GT	GAG
(GCT)	 AG	873-893	GT	AAG
(GAA)	 AG	1513-1533	GT	GTG
(AGA)	 AG	1559-1573	GT	AGG
(GCT)	 AG	1591-1635	GT	GGG
(AGG)	 AG	1666-1686	GT	GAG
(AGA)	 AG	1708-1728	GT	AGG
(GGA)	 AG	1752-1802	GT	GAG
(GGG)	 AG	1833-1913	GT	GAG
(GCA)	 AG	1960-1968	GT	GGG
(ATG)	 AG	1996-2007	GT	GAG
(AGC)	 AG	2029-2076	GT	GGG
(TGG)	 AG	2100-2117	GT	GGG
(AGA)	 AG	2143-2209	GT	GGG
(GTC)	 AG	2361-2372	GT	CAG
(GTC)	 AG	2425-2452	GT	CAG
(GTC)	 AG	2479-2490	GT	CTG
(GGA)	 AG	2591-2616	TT	AAT
-recovered GeneMark_model.108934_t, initial, 1996, 2007
-recovered GeneMark_model.108934_t, terminal, 2591, 2616
-recovered GeneMark_model.108934_t, internal, 48, 117
-recovered GeneMark_model.108934_t, internal, 737, 769
-recovered GeneMark_model.108934_t, internal, 801, 827
-recovered GeneMark_model.108934_t, internal, 873, 893
-recovered GeneMark_model.108934_t, internal, 1513, 1533
-recovered GeneMark_model.108934_t, internal, 1559, 1573
-recovered GeneMark_model.108934_t, internal, 1591, 1635
-recovered GeneMark_model.108934_t, internal, 1666, 1686
-recovered GeneMark_model.108934_t, internal, 1708, 1728
-recovered GeneMark_model.108934_t, internal, 1752, 1802
-recovered GeneMark_model.108934_t, internal, 1833, 1913
-recovered GeneMark_model.108934_t, internal, 1960, 1968
-recovered GeneMark_model.108934_t, internal, 1996, 2007
-recovered GeneMark_model.108934_t, internal, 2029, 2076
-recovered GeneMark_model.108934_t, internal, 2100, 2117
-recovered GeneMark_model.108934_t, internal, 2143, 2209
-recovered GeneMark_model.108934_t, internal, 2361, 2372
-recovered GeneMark_model.108934_t, internal, 2425, 2452
-recovered GeneMark_model.108934_t, internal, 2479, 2490

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3214
-exon list size: 56


building trellis

1.7    
3.4    
5.2    
6.9    
8.6    
10.3    
12.1    
13.8    
15.5    
17.2    
19.0    
20.7    
22.4    
24.1    
25.9    
27.6    
29.3    
31.0    
32.8    
34.5    
36.2    
37.9    
39.7    
41.4    
43.1    
44.8    
46.6    
48.3    
50.0    
51.7    
53.4    
55.2    
56.9    
58.6    
60.3    
62.1    
63.8    
65.5    
67.2    
69.0    
70.7    
72.4    
74.1    
75.9    
77.6    
79.3    
81.0    
82.8    
84.5    
86.2    
87.9    
89.7    
91.4    
93.1    
94.8    
96.6    
98.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support