-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1124

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 44, 96
Sorry, prediction GeneMark_model.108927_t fails validation.
(GGG)	 AG	44-96	GT	ATG
(AAG)	 AG	162-182	GC	GAG
(GAA)	 AG	208-429	GC	GAG
(GGA)	 AG	453-478	GT	CGG
(GAG)	 AG	500-587	GT	GAG
(AGG)	 AG	610-678	GT	AGG
(GGT)	 AG	917-979	GT	GGG
(AGA)	 AG	1002-1011	GA	GAG
-recovered GeneMark_model.108927_t, terminal, 1002, 1011
-recovered GeneMark_model.108927_t, internal, 44, 96
-recovered GeneMark_model.108927_t, internal, 162, 182
-recovered GeneMark_model.108927_t, internal, 208, 429
-recovered GeneMark_model.108927_t, internal, 453, 478
-recovered GeneMark_model.108927_t, internal, 500, 587
-recovered GeneMark_model.108927_t, internal, 610, 678
-recovered GeneMark_model.108927_t, internal, 917, 979

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 272, 295
Sorry, prediction GeneMark_model.108928_t fails validation.
(GGA)	 AG	272-295	GT	GGG
(AGA)	 AG	582-599	GT	GGG
(AGG)	 AG	628-645	GT	AGG
(AGA)	 AG	675-725	GT	GGG
(AGA)	 AG	756-797	GT	AGG
(AGA)	 AG	822-830	GT	GAG
(GAG)	 AG	864-1220	GC	GAG
(ACG)	 AG	1244-1388	CT	GAC
-recovered GeneMark_model.108928_t, terminal, 1244, 1388
-recovered GeneMark_model.108928_t, internal, 272, 295
-recovered GeneMark_model.108928_t, internal, 582, 599
-recovered GeneMark_model.108928_t, internal, 628, 645
-recovered GeneMark_model.108928_t, internal, 675, 725
-recovered GeneMark_model.108928_t, internal, 756, 797
-recovered GeneMark_model.108928_t, internal, 822, 830
-recovered GeneMark_model.108928_t, internal, 864, 1220
Valid prediction for GlimmerHMM_glimmerT_62484-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3222
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support