-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1122

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62483-T1
Couldn't classify 2536, 2861
Sorry, prediction snap_scaffold_1122-snap.1-T1 fails validation.
(ATG)	 AC	674-687	GT	TTG
(GTT)	 AG	1132-1172	GT	AGG
(GAG)	 AG	2536-2861	GT	AGG
-recovered snap_scaffold_1122-snap.1-T1, initial, 674, 687
-recovered snap_scaffold_1122-snap.1-T1, internal, 1132, 1172
-recovered snap_scaffold_1122-snap.1-T1, internal, 2536, 2861

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 305, 576
Couldn't classify 2091, 2112
Sorry, prediction GeneMark_model.108923_t fails validation.
(CTC)	 AG	305-576	GT	TGG
(GCC)	 AG	614-666	GT	GTG
(GGA)	 AG	949-1011	GC	AGG
(GGG)	 AG	1032-1040	GT	GAG
(AGA)	 AG	1062-1105	GT	ATG
(GGA)	 AG	1455-1683	GT	ATG
(GGA)	 AG	1725-1964	GT	GGG
(AGT)	 AG	2000-2043	GT	CGG
(AAG)	 AG	2091-2112	GT	AGG
-recovered GeneMark_model.108923_t, internal, 305, 576
-recovered GeneMark_model.108923_t, internal, 614, 666
-recovered GeneMark_model.108923_t, internal, 949, 1011
-recovered GeneMark_model.108923_t, internal, 1032, 1040
-recovered GeneMark_model.108923_t, internal, 1062, 1105
-recovered GeneMark_model.108923_t, internal, 1455, 1683
-recovered GeneMark_model.108923_t, internal, 1725, 1964
-recovered GeneMark_model.108923_t, internal, 2000, 2043
-recovered GeneMark_model.108923_t, internal, 2091, 2112
Valid prediction for Augustus_model.g41540.t1
add_exon() Sorry, Augustus_model.g41540.t1 293-603-terminal-1 is invalid.
Valid prediction for snap_scaffold_1122-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2861, rend_intergenic: 927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3227
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2861, rend_intergenic: 927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support